IL_6DDD_108

3D structure

PDB id

6DDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAAG*UGAGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DDD_108 not in the Motif Atlas

Homologous match to IL_7A0S_056

Geometric discrepancy: 0.5248

The information below is about IL_7A0S_056

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6DDD|1|1|G|1518
6DDD|1|1|U|1519
6DDD|1|1|A|1520
6DDD|1|1|A|1521
6DDD|1|1|G|1522
*
6DDD|1|1|U|1558
6DDD|1|1|G|1559
6DDD|1|1|A|1560
6DDD|1|1|G|1561
6DDD|1|1|C|1562

Current chains

Chain 1

23S rRNA

Nearby chains