IL_6DDG_020

3D structure

PDB id

6DDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DDG_020 not in the Motif Atlas

Geometric match to IL_4V9F_027

Geometric discrepancy: 0.1097

The information below is about IL_4V9F_027

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

24

Unit IDs

6DDG|1|1|U|748
6DDG|1|1|G|749
6DDG|1|1|A|750
6DDG|1|1|A|751
6DDG|1|1|G|752
*
6DDG|1|1|U|769
6DDG|1|1|G|770
6DDG|1|1|G|771
6DDG|1|1|A|772
6DDG|1|1|G|773

Current chains

Chain 1

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L2