IL_6DDG_035
3D structure
- PDB id
- 6DDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUAAGUG*CUAAA
- Length
- 12 nucleotides
- Bulged bases
- 6DDG|1|1|A|1187
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6DDG_035 not in the Motif Atlas
- Geometric match to IL_4WF9_039
- Geometric discrepancy: 0.1497
- The information below is about IL_4WF9_039
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_57188.6
- Basepair signature
- cWW-tWW-L-tWW-cWW-cSH
- Number of instances in this motif group
- 6
Unit IDs
6DDG|1|1|U|1062
6DDG|1|1|U|1063
6DDG|1|1|A|1064
6DDG|1|1|A|1065
6DDG|1|1|G|1066
6DDG|1|1|U|1067
6DDG|1|1|G|1068
*
6DDG|1|1|C|1184
6DDG|1|1|U|1185
6DDG|1|1|A|1186
6DDG|1|1|A|1187
6DDG|1|1|A|1188
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain R
- 50S ribosomal protein L36
- Chain V
- 50S ribosomal protein L13
Coloring options: