IL_6DDG_057

3D structure

PDB id

6DDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

6DDG|1|1|G|1743

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DDG_057 not in the Motif Atlas

Geometric match to IL_5TBW_078

Geometric discrepancy: 0.0967

The information below is about IL_5TBW_078

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6DDG|1|1|C|1730
6DDG|1|1|G|1731
6DDG|1|1|U|1732
6DDG|1|1|A|1733
6DDG|1|1|A|1734
6DDG|1|1|C|1735
*
6DDG|1|1|G|1740
6DDG|1|1|G|1741
6DDG|1|1|A|1742
6DDG|1|1|G|1743
6DDG|1|1|A|1744
6DDG|1|1|A|1745
6DDG|1|1|G|1746

Current chains

Chain 1

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L2