IL_6DDG_058

3D structure

PDB id

6DDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUUAGGG*CCCAGAA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DDG_058 not in the Motif Atlas

Homologous match to IL_4WF9_118

Geometric discrepancy: 0.366

The information below is about IL_4WF9_118

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6DDG|1|1|U|1755
6DDG|1|1|U|1756
6DDG|1|1|U|1757
6DDG|1|1|A|1758
6DDG|1|1|G|1759
6DDG|1|1|G|1760
6DDG|1|1|G|1761
*
6DDG|1|1|C|1768
6DDG|1|1|C|1769
6DDG|1|1|C|1770
6DDG|1|1|A|1771
6DDG|1|1|G|1772
6DDG|1|1|A|1773
6DDG|1|1|A|1774

Current chains

Chain 1

23S rRNA

Nearby chains