IL_6DDG_059

3D structure

PDB id

6DDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGC*GAUU

Length

7 nucleotides

Bulged bases

6DDG|1|1|A|2008

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DDG_059 not in the Motif Atlas

Geometric match to IL_4E59_001

Geometric discrepancy: 0.1599

The information below is about IL_4E59_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

6DDG|1|1|A|1796
6DDG|1|1|G|1797
6DDG|1|1|C|1798
*
6DDG|1|1|G|2007
6DDG|1|1|A|2008
6DDG|1|1|U|2009
6DDG|1|1|U|2010

Current chains

Chain 1

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L2