IL_6DDG_070

3D structure

PDB id

6DDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACGG*CCUAU

Length

9 nucleotides

Bulged bases

6DDG|1|1|C|2082, 6DDG|1|1|U|2640, 6DDG|1|1|A|2641

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6DDG|1|1|A|2081
6DDG|1|1|C|2082
6DDG|1|1|G|2083
6DDG|1|1|G|2084
*
6DDG|1|1|C|2638
6DDG|1|1|C|2639
6DDG|1|1|U|2640
6DDG|1|1|A|2641
6DDG|1|1|U|2642

Current chains

Chain 1

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L22

Chain L

50S ribosomal protein L3

Chain N

50S ribosomal protein L32