IL_6DDG_081

3D structure

PDB id

6DDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DDG_081 not in the Motif Atlas

Geometric match to IL_7A0S_086

Geometric discrepancy: 0.1869

The information below is about IL_7A0S_086

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

6DDG|1|1|A|2486
6DDG|1|1|U|2487
6DDG|1|1|C|2488
*
6DDG|1|1|G|2516
6DDG|1|1|G|2517
6DDG|1|1|U|2518
6DDG|1|1|U|2519
6DDG|1|1|U|2520

Current chains

Chain 1

23S rRNA

Nearby chains

Chain Y

50S ribosomal protein L16