IL_6DDG_104

3D structure

PDB id

6DDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S ribosomal subunit from Methicillin Resistant Staphylococcus aureus in complex with the oxazolidinone antibiotic LZD-6

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUAU*AUU

Length

7 nucleotides

Bulged bases

6DDG|1|1|U|1056

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DDG_104 not in the Motif Atlas

Geometric match to IL_8AF0_001

Geometric discrepancy: 0.1964

The information below is about IL_8AF0_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

6DDG|1|1|A|1055
6DDG|1|1|U|1056
6DDG|1|1|A|1057
6DDG|1|1|U|1058
*
6DDG|1|1|A|1192
6DDG|1|1|U|1193
6DDG|1|1|U|1194

Current chains

Chain 1

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L20

Chain V

50S ribosomal protein L13