IL_6DV9_001
3D structure
- PDB id
- 6DV9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Mycobacterium tuberculosis transcription initiation complex(ECF sigma factor L) containing 5nt RNA with 4nt spacer
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.8 Å
Loop
- Sequence
- CATC*GATG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6DV9|1|G|DC|5
6DV9|1|G|DA|6
6DV9|1|G|DT|7
6DV9|1|G|DC|8
*
6DV9|1|H|DG|21
6DV9|1|H|DA|22
6DV9|1|H|DT|23
6DV9|1|H|DG|24
Current chains
- Chain G
- DNA (5'-D(*GP*CP*AP*TP*CP*CP*GP*TP*GP*AP*GP*TP*CP*GP*AP*GP*G)-3')
- Chain H
- DNA (5'-D(P*CP*GP*TP*GP*TP*CP*AP*GP*AP*GP*TP*GP*TP*CP*AP*CP*GP*GP*AP*TP*GP*C)-3')
Nearby chains
- Chain C
- DNA-directed RNA polymerase subunit beta
- Chain D
- DNA-directed RNA polymerase subunit beta'
Coloring options: