IL_6DVK_002

3D structure

PDB id

6DVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Computationally designed mini tetraloop-tetraloop receptor by the RNAMake program - construct 6 (miniTTR 6)

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CCGAG*CGUUUGACG

Length

14 nucleotides

Bulged bases

6DVK|1|H|U|71, 6DVK|1|H|U|72

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_69229.5

Basepair signature

cWW-tSS-tSH-L-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6DVK|1|H|C|18
6DVK|1|H|C|19
6DVK|1|H|G|20
6DVK|1|H|A|21
6DVK|1|H|G|22
*
6DVK|1|H|C|68
6DVK|1|H|G|69
6DVK|1|H|U|70
6DVK|1|H|U|71
6DVK|1|H|U|72
6DVK|1|H|G|73
6DVK|1|H|A|74
6DVK|1|H|C|75
6DVK|1|H|G|76

Current chains

Chain H

RNA (95-MER)

Nearby chains