IL_6DZI_002

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

GCA*UGAC

Length

7 nucleotides

Bulged bases

6DZI|1|A|A|531

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZI_002 not in the Motif Atlas

Geometric match to IL_5M0H_001

Geometric discrepancy: 0.1953

The information below is about IL_5M0H_001

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6DZI|1|A|G|33
6DZI|1|A|C|34
6DZI|1|A|A|35
*
6DZI|1|A|U|529
6DZI|1|A|G|530
6DZI|1|A|A|531
6DZI|1|A|C|532

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains

Chain E

50S ribosomal protein L4

Chain R

50S ribosomal protein L20