IL_6DZI_006

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

GGAAGUG*CUCAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZI_006 not in the Motif Atlas

Homologous match to IL_7RQB_006

Geometric discrepancy: 0.1269

The information below is about IL_7RQB_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6DZI|1|A|G|187
6DZI|1|A|G|188
6DZI|1|A|A|189
6DZI|1|A|A|190
6DZI|1|A|G|191
6DZI|1|A|U|192
6DZI|1|A|G|193
*
6DZI|1|A|C|200
6DZI|1|A|U|201
6DZI|1|A|C|202
6DZI|1|A|A|203
6DZI|1|A|G|204
6DZI|1|A|U|205
6DZI|1|A|A|206
6DZI|1|A|C|207

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains

Chain M

50S ribosomal protein L15

Chain e

50S ribosomal protein L35

Chain y

50S ribosomal protein L28