IL_6DZI_007

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZI_007 not in the Motif Atlas

Homologous match to IL_7RQB_007

Geometric discrepancy: 0.1621

The information below is about IL_7RQB_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6DZI|1|A|U|239
6DZI|1|A|G|240
6DZI|1|A|A|241
6DZI|1|A|G|242
6DZI|1|A|U|243
6DZI|1|A|A|244
6DZI|1|A|G|245
*
6DZI|1|A|C|253
6DZI|1|A|G|254
6DZI|1|A|A|255
6DZI|1|A|A|256
6DZI|1|A|A|257
6DZI|1|A|G|258

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains

Chain M

50S ribosomal protein L15

Chain e

50S ribosomal protein L35