IL_6DZI_010

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

UAG*UGAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZI_010 not in the Motif Atlas

Homologous match to IL_7RQB_013

Geometric discrepancy: 0.1744

The information below is about IL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69440.1

Basepair signature

cWW-L-R-cSH-cWW

Number of instances in this motif group

3

Unit IDs

6DZI|1|A|U|374
6DZI|1|A|A|375
6DZI|1|A|G|376
*
6DZI|1|A|U|425
6DZI|1|A|G|426
6DZI|1|A|A|427
6DZI|1|A|A|428
6DZI|1|A|A|429

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains

Chain V

50S ribosomal protein L24