IL_6DZI_012
3D structure
- PDB id
- 6DZI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.46 Å
Loop
- Sequence
- GUAC*GAGUGAAAGAGUAC
- Length
- 18 nucleotides
- Bulged bases
- 6DZI|1|A|G|591, 6DZI|1|A|A|595
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6DZI_012 not in the Motif Atlas
- Geometric match to IL_5TBW_014
- Geometric discrepancy: 0.1804
- The information below is about IL_5TBW_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.7
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
6DZI|1|A|G|569
6DZI|1|A|U|570
6DZI|1|A|A|571
6DZI|1|A|C|572
*
6DZI|1|A|G|583
6DZI|1|A|A|584
6DZI|1|A|G|585
6DZI|1|A|U|586
6DZI|1|A|G|587
6DZI|1|A|A|588
6DZI|1|A|A|589
6DZI|1|A|A|590
6DZI|1|A|G|591
6DZI|1|A|A|592
6DZI|1|A|G|593
6DZI|1|A|U|594
6DZI|1|A|A|595
6DZI|1|A|C|596
Current chains
- Chain A
- 23 S rRNA (3119-MER)
Nearby chains
- Chain T
- 50S ribosomal protein L22
- Chain V
- 50S ribosomal protein L24
Coloring options: