IL_6DZI_017
3D structure
- PDB id
- 6DZI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.46 Å
Loop
- Sequence
- UUAAC*GGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6DZI_017 not in the Motif Atlas
- Homologous match to IL_7A0S_013
- Geometric discrepancy: 0.1678
- The information below is about IL_7A0S_013
- Detailed Annotation
- AAA cross-strand stack
- Broad Annotation
- AAA cross-strand stack
- Motif group
- IL_66798.3
- Basepair signature
- cWW-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
6DZI|1|A|U|699
6DZI|1|A|U|700
6DZI|1|A|A|701
6DZI|1|A|A|702
6DZI|1|A|C|703
*
6DZI|1|A|G|712
6DZI|1|A|G|713
6DZI|1|A|U|714
6DZI|1|A|A|715
6DZI|1|A|G|716
Current chains
- Chain A
- 23 S rRNA (3119-MER)
Nearby chains
- Chain E
- 50S ribosomal protein L4
- Chain M
- 50S ribosomal protein L15
Coloring options: