IL_6DZI_022

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZI_022 not in the Motif Atlas

Geometric match to IL_4V9F_027

Geometric discrepancy: 0.1475

The information below is about IL_4V9F_027

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.1

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

22

Unit IDs

6DZI|1|A|U|818
6DZI|1|A|G|819
6DZI|1|A|A|820
6DZI|1|A|A|821
6DZI|1|A|G|822
*
6DZI|1|A|U|839
6DZI|1|A|G|840
6DZI|1|A|G|841
6DZI|1|A|A|842
6DZI|1|A|G|843

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains

Chain C

50S ribosomal protein L2