IL_6DZI_037

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

CCCCUAAG*CG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZI_037 not in the Motif Atlas

Geometric match to IL_7RQB_037

Geometric discrepancy: 0.1416

The information below is about IL_7RQB_037

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_15861.7

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

6DZI|1|A|C|1122
6DZI|1|A|C|1123
6DZI|1|A|C|1124
6DZI|1|A|C|1125
6DZI|1|A|U|1126
6DZI|1|A|A|1127
6DZI|1|A|A|1128
6DZI|1|A|G|1129
*
6DZI|1|A|C|1269
6DZI|1|A|G|1270

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains

Chain K

50S ribosomal protein L13

Chain R

50S ribosomal protein L20