IL_6DZI_040
3D structure
- PDB id
- 6DZI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.46 Å
Loop
- Sequence
- GGAAAAG*CGAUAAUGUAGCGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 6DZI|1|A|U|1245, 6DZI|1|A|U|1248
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6DZI_040 not in the Motif Atlas
- Geometric match to IL_5J7L_281
- Geometric discrepancy: 0.1293
- The information below is about IL_5J7L_281
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.3
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
6DZI|1|A|G|1142
6DZI|1|A|G|1143
6DZI|1|A|A|1144
6DZI|1|A|A|1145
6DZI|1|A|A|1146
6DZI|1|A|A|1147
6DZI|1|A|G|1148
*
6DZI|1|A|C|1242
6DZI|1|A|G|1243
6DZI|1|A|A|1244
6DZI|1|A|U|1245
6DZI|1|A|A|1246
6DZI|1|A|A|1247
6DZI|1|A|U|1248
6DZI|1|A|G|1249
6DZI|1|A|U|1250
6DZI|1|A|A|1251
6DZI|1|A|G|1252
6DZI|1|A|C|1253
6DZI|1|A|G|1254
6DZI|1|A|G|1255
6DZI|1|A|G|1256
6DZI|1|A|G|1257
6DZI|1|A|C|1258
Current chains
- Chain A
- 23 S rRNA (3119-MER)
Nearby chains
- Chain 3
- Uncharacterized protein
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain D
- 50S ribosomal protein L3
- Chain K
- 50S ribosomal protein L13
- Chain N
- 50S ribosomal protein L16
- Chain f
- 50S ribosomal protein L36
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