IL_6DZI_052
3D structure
- PDB id
- 6DZI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.46 Å
Loop
- Sequence
- CGAGG*CGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6DZI_052 not in the Motif Atlas
- Homologous match to IL_5J7L_293
- Geometric discrepancy: 0.156
- The information below is about IL_5J7L_293
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.7
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 14
Unit IDs
6DZI|1|A|C|1472
6DZI|1|A|G|1473
6DZI|1|A|A|1474
6DZI|1|A|G|1475
6DZI|1|A|G|1476
*
6DZI|1|A|C|1485
6DZI|1|A|G|1486
6DZI|1|A|U|1487
6DZI|1|A|A|1488
6DZI|1|A|G|1489
Current chains
- Chain A
- 23 S rRNA (3119-MER)
Nearby chains
- Chain C
- 50S ribosomal protein L2
- Chain d
- 50S ribosomal protein L34
- Chain y
- 50S ribosomal protein L28
Coloring options: