IL_6DZI_071

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

6DZI|1|A|G|1917

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZI_071 not in the Motif Atlas

Geometric match to IL_7RQB_068

Geometric discrepancy: 0.1077

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6DZI|1|A|C|1904
6DZI|1|A|G|1905
6DZI|1|A|U|1906
6DZI|1|A|A|1907
6DZI|1|A|A|1908
6DZI|1|A|C|1909
*
6DZI|1|A|G|1914
6DZI|1|A|G|1915
6DZI|1|A|A|1916
6DZI|1|A|G|1917
6DZI|1|A|A|1918
6DZI|1|A|A|1919
6DZI|1|A|G|1920

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains

Chain C

50S ribosomal protein L2

Chain h

Small subunit ribosomal RNA; SSU rRNA

Chain j

CONSERVED PROTEIN DOMAIN