IL_6DZI_088

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

CAAC*GUGGG

Length

9 nucleotides

Bulged bases

6DZI|1|A|G|2462

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZI_088 not in the Motif Atlas

Geometric match to IL_3NPQ_006

Geometric discrepancy: 0.3496

The information below is about IL_3NPQ_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93503.1

Basepair signature

cWW-cWW-L-R-L-cWW-L

Number of instances in this motif group

4

Unit IDs

6DZI|1|A|C|2304
6DZI|1|A|A|2305
6DZI|1|A|A|2306
6DZI|1|A|C|2307
*
6DZI|1|A|G|2459
6DZI|1|A|U|2460
6DZI|1|A|G|2461
6DZI|1|A|G|2462
6DZI|1|A|G|2463

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains

Chain C

50S ribosomal protein L2

Chain y

50S ribosomal protein L28