IL_6DZI_103

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZI_103 not in the Motif Atlas

Homologous match to IL_4WF9_093

Geometric discrepancy: 0.2049

The information below is about IL_4WF9_093

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

6DZI|1|A|C|2690
6DZI|1|A|C|2691
6DZI|1|A|A|2692
6DZI|1|A|A|2693
6DZI|1|A|G|2694
*
6DZI|1|A|C|2704
6DZI|1|A|G|2705
6DZI|1|A|A|2706
6DZI|1|A|C|2707
6DZI|1|A|G|2708

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains

Chain N

50S ribosomal protein L16

Chain f

50S ribosomal protein L36