IL_6DZI_105

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

6DZI|1|A|G|2800, 6DZI|1|A|A|2801

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZI_105 not in the Motif Atlas

Geometric match to IL_7RQB_097

Geometric discrepancy: 0.1119

The information below is about IL_7RQB_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_90933.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

6DZI|1|A|C|2734
6DZI|1|A|U|2735
6DZI|1|A|C|2736
*
6DZI|1|A|G|2798
6DZI|1|A|C|2799
6DZI|1|A|G|2800
6DZI|1|A|A|2801
6DZI|1|A|G|2802

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains

Chain D

50S ribosomal protein L3

Chain b

50S ribosomal protein L32