IL_6DZI_113

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

UU*ACGG

Length

6 nucleotides

Bulged bases

6DZI|1|A|C|2936, 6DZI|1|A|G|2937

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZI_113 not in the Motif Atlas

Homologous match to IL_5J7L_349

Geometric discrepancy: 0.1252

The information below is about IL_5J7L_349

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

6DZI|1|A|U|2919
6DZI|1|A|U|2920
*
6DZI|1|A|A|2935
6DZI|1|A|C|2936
6DZI|1|A|G|2937
6DZI|1|A|G|2938

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains

Chain O

50S ribosomal protein L17

Chain Q

50S ribosomal protein L19