IL_6DZI_115

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

GAC*GCAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZI_115 not in the Motif Atlas

Geometric match to IL_5ML7_010

Geometric discrepancy: 0.1718

The information below is about IL_5ML7_010

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

27

Unit IDs

6DZI|1|A|G|3059
6DZI|1|A|A|3060
6DZI|1|A|C|3061
*
6DZI|1|A|G|3098
6DZI|1|A|C|3099
6DZI|1|A|A|3100
6DZI|1|A|C|3101

Current chains

Chain A

23 S rRNA (3119-MER)

Nearby chains

Chain O

50S ribosomal protein L17

Chain Q

50S ribosomal protein L19