IL_6DZI_122
3D structure
- PDB id
- 6DZI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.46 Å
Loop
- Sequence
- CGAUGAUAC*GAAAAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6DZI_122 not in the Motif Atlas
- Homologous match to IL_7RQB_115
- Geometric discrepancy: 0.1518
- The information below is about IL_7RQB_115
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.3
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
6DZI|1|B|C|72
6DZI|1|B|G|73
6DZI|1|B|A|74
6DZI|1|B|U|75
6DZI|1|B|G|76
6DZI|1|B|A|77
6DZI|1|B|U|78
6DZI|1|B|A|79
6DZI|1|B|C|80
*
6DZI|1|B|G|95
6DZI|1|B|A|96
6DZI|1|B|A|97
6DZI|1|B|A|98
6DZI|1|B|A|99
6DZI|1|B|G|100
6DZI|1|B|U|101
6DZI|1|B|A|102
6DZI|1|B|G|103
Current chains
- Chain B
- 5S RNA (118-MER)
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain N
- 50S ribosomal protein L16
- Chain W
- 50S ribosomal protein L25
- Chain a
- 50S ribosomal protein L30
Coloring options: