3D structure

PDB id
6DZI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.46 Å

Loop

Sequence
CGUAG*UGAGG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6DZI_146 not in the Motif Atlas
Homologous match to IL_5J7L_027
Geometric discrepancy: 0.1448
The information below is about IL_5J7L_027
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_17136.7
Basepair signature
cWW-tSH-tHW-tHS-cWW
Number of instances in this motif group
14

Unit IDs

6DZI|1|h|C|560
6DZI|1|h|G|561
6DZI|1|h|U|562
6DZI|1|h|A|563
6DZI|1|h|G|564
*
6DZI|1|h|U|737
6DZI|1|h|G|738
6DZI|1|h|A|739
6DZI|1|h|G|740
6DZI|1|h|G|741

Current chains

Chain h
16S rRNA

Nearby chains

Chain 5
30S ribosomal protein S17
Chain A
Large subunit ribosomal RNA; LSU rRNA
Chain q
30S ribosomal protein S8
Chain u
30S ribosomal protein S12
Chain x
30S ribosomal protein S15

Coloring options:


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