IL_6DZI_159

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

GGG*UU

Length

5 nucleotides

Bulged bases

6DZI|1|h|G|908

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZI_159 not in the Motif Atlas

Homologous match to IL_5J7L_040

Geometric discrepancy: 0.1399

The information below is about IL_5J7L_040

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

6DZI|1|h|G|907
6DZI|1|h|G|908
6DZI|1|h|G|909
*
6DZI|1|h|U|1373
6DZI|1|h|U|1374

Current chains

Chain h

16S rRNA

Nearby chains

Chain Y

Ribosome hibernation promoting factor