IL_6DZI_166
3D structure
- PDB id
- 6DZI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.46 Å
Loop
- Sequence
- UG*CAA
- Length
- 5 nucleotides
- Bulged bases
- 6DZI|1|h|A|1177
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6DZI_166 not in the Motif Atlas
- Geometric match to IL_5J7L_049
- Geometric discrepancy: 0.2059
- The information below is about IL_5J7L_049
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.7
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 132
Unit IDs
6DZI|1|h|U|1040
6DZI|1|h|G|1041
*
6DZI|1|h|C|1176
6DZI|1|h|A|1177
6DZI|1|h|A|1178
Current chains
- Chain h
- 16S rRNA
Nearby chains
- Chain 4
- 30S ribosomal protein S9
- Chain 9
- 30S ribosomal protein S14
- Chain Y
- Ribosome hibernation promoting factor
- Chain k
- 30S ribosomal protein S3
- Chain m
- 30S ribosomal protein S5
- Chain s
- 30S ribosomal protein S10
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