IL_6DZI_211

3D structure

PDB id

6DZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

CAUG*UGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZI_211 not in the Motif Atlas

Homologous match to IL_6CZR_168

Geometric discrepancy: 0.2625

The information below is about IL_6CZR_168

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67743.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

9

Unit IDs

6DZI|1|h|C|1395
6DZI|1|h|A|1396
6DZI|1|h|U|1397
6DZI|1|h|G|1398
*
6DZI|1|h|U|1469
6DZI|1|h|G|1470
6DZI|1|h|G|1471
6DZI|1|h|G|1472

Current chains

Chain h

16S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain j

CONSERVED PROTEIN DOMAIN

Chain u

30S ribosomal protein S12