IL_6DZK_028
3D structure
- PDB id
- 6DZK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of Mycobacterium smegmatis C(minus) 30S ribosomal subunit with MPY
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UGAAAAC*GCGUG
- Length
- 12 nucleotides
- Bulged bases
- 6DZK|1|A|U|612
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6DZK_028 not in the Motif Atlas
- Geometric match to IL_8C3A_433
- Geometric discrepancy: 0.3415
- The information below is about IL_8C3A_433
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_83023.1
- Basepair signature
- cWW-R-L-R-L-R-L-L-L-L
- Number of instances in this motif group
- 1
Unit IDs
6DZK|1|A|U|585
6DZK|1|A|G|586
6DZK|1|A|A|587
6DZK|1|A|A|588
6DZK|1|A|A|589
6DZK|1|A|A|590
6DZK|1|A|C|591
*
6DZK|1|A|G|609
6DZK|1|A|C|610
6DZK|1|A|G|611
6DZK|1|A|U|612
6DZK|1|A|G|613
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain D
- 30S ribosomal protein S4
- Chain H
- 30S ribosomal protein S8
- Chain P
- 30S ribosomal protein S16
Coloring options: