IL_6DZK_030

3D structure

PDB id

6DZK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 30S ribosomal subunit with MPY

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UA*UAA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZK_030 not in the Motif Atlas

Homologous match to IL_6CZR_140

Geometric discrepancy: 0.3391

The information below is about IL_6CZR_140

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.5

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

44

Unit IDs

6DZK|1|A|U|637
6DZK|1|A|A|638
*
6DZK|1|A|U|727
6DZK|1|A|A|728
6DZK|1|A|A|729

Current chains

Chain A

16S rRNA

Nearby chains

Chain H

30S ribosomal protein S8

Chain O

30S ribosomal protein S15