IL_6DZK_041

3D structure

PDB id

6DZK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 30S ribosomal subunit with MPY

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

6DZK|1|A|U|1029

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZK_041 not in the Motif Atlas

Homologous match to IL_6CZR_152

Geometric discrepancy: 0.2834

The information below is about IL_6CZR_152

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6DZK|1|A|G|1028
6DZK|1|A|U|1029
6DZK|1|A|G|1030
*
6DZK|1|A|C|1189
6DZK|1|A|C|1190

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

30S ribosomal protein S14

Chain Y

Ribosome hibernation promoting factor