IL_6DZP_007

3D structure

PDB id

6DZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZP_007 not in the Motif Atlas

Homologous match to IL_7RQB_007

Geometric discrepancy: 0.1621

The information below is about IL_7RQB_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6DZP|1|A|U|239
6DZP|1|A|G|240
6DZP|1|A|A|241
6DZP|1|A|G|242
6DZP|1|A|U|243
6DZP|1|A|A|244
6DZP|1|A|G|245
*
6DZP|1|A|C|253
6DZP|1|A|G|254
6DZP|1|A|A|255
6DZP|1|A|A|256
6DZP|1|A|A|257
6DZP|1|A|G|258

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L15

Chain e

50S ribosomal protein L35