IL_6DZP_026

3D structure

PDB id

6DZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

UGU*AGAG

Length

7 nucleotides

Bulged bases

6DZP|1|A|G|1049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZP_026 not in the Motif Atlas

Geometric match to IL_7RQB_025

Geometric discrepancy: 0.3304

The information below is about IL_7RQB_025

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_52767.4

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

6DZP|1|A|U|959
6DZP|1|A|G|960
6DZP|1|A|U|961
*
6DZP|1|A|A|1048
6DZP|1|A|G|1049
6DZP|1|A|A|1050
6DZP|1|A|G|1051

Current chains

Chain A

23S rRNA

Nearby chains

Chain a

50S ribosomal protein L30