IL_6DZP_039

3D structure

PDB id

6DZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

CUAAGUG*CUCAAG

Length

13 nucleotides

Bulged bases

6DZP|1|A|C|1260, 6DZP|1|A|A|1262

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZP_039 not in the Motif Atlas

Geometric match to IL_7RQB_039

Geometric discrepancy: 0.146

The information below is about IL_7RQB_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57188.3

Basepair signature

cWW-cSH-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

6DZP|1|A|C|1136
6DZP|1|A|U|1137
6DZP|1|A|A|1138
6DZP|1|A|A|1139
6DZP|1|A|G|1140
6DZP|1|A|U|1141
6DZP|1|A|G|1142
*
6DZP|1|A|C|1258
6DZP|1|A|U|1259
6DZP|1|A|C|1260
6DZP|1|A|A|1261
6DZP|1|A|A|1262
6DZP|1|A|G|1263

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain K

50S ribosomal protein L13

Chain f

50S ribosomal protein L36