IL_6DZP_044

3D structure

PDB id

6DZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

6DZP|1|A|A|1206

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZP_044 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.2583

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

6DZP|1|A|G|1205
6DZP|1|A|A|1206
6DZP|1|A|G|1207
6DZP|1|A|U|1208
6DZP|1|A|G|1209
*
6DZP|1|A|C|1218
6DZP|1|A|U|1219
6DZP|1|A|C|1220

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain J

50S ribosomal protein L11

Chain f

50S ribosomal protein L36