IL_6DZP_045

3D structure

PDB id

6DZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

6DZP|1|A|G|1363

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZP_045 not in the Motif Atlas

Homologous match to IL_4WF9_044

Geometric discrepancy: 0.1754

The information below is about IL_4WF9_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

6DZP|1|A|C|1311
6DZP|1|A|G|1312
6DZP|1|A|U|1313
*
6DZP|1|A|A|1362
6DZP|1|A|G|1363
6DZP|1|A|U|1364
6DZP|1|A|G|1365

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain M

50S ribosomal protein L15

Chain R

50S ribosomal protein L20