IL_6DZP_048
3D structure
- PDB id
- 6DZP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.42 Å
Loop
- Sequence
- AUGAGUAG*CGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6DZP_048 not in the Motif Atlas
- Homologous match to IL_5J7L_289
- Geometric discrepancy: 0.1542
- The information below is about IL_5J7L_289
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6DZP|1|A|A|1377
6DZP|1|A|U|1378
6DZP|1|A|G|1379
6DZP|1|A|A|1380
6DZP|1|A|G|1381
6DZP|1|A|U|1382
6DZP|1|A|A|1383
6DZP|1|A|G|1384
*
6DZP|1|A|C|2235
6DZP|1|A|G|2236
6DZP|1|A|A|2237
6DZP|1|A|A|2238
6DZP|1|A|A|2239
6DZP|1|A|U|2240
6DZP|1|A|U|2241
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain E
- 50S ribosomal protein L4
- Chain R
- 50S ribosomal protein L20
- Chain T
- 50S ribosomal protein L22
- Chain b
- 50S ribosomal protein L32
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