IL_6DZP_064

3D structure

PDB id

6DZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

CUGUAG*UGAGAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZP_064 not in the Motif Atlas

Geometric match to IL_7A0S_027

Geometric discrepancy: 0.389

The information below is about IL_7A0S_027

Detailed Annotation

5x5 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_81631.1

Basepair signature

cWW-L-R-cSH-R-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

6DZP|1|A|C|1694
6DZP|1|A|U|1695
6DZP|1|A|G|1696
6DZP|1|A|U|1697
6DZP|1|A|A|1698
6DZP|1|A|G|1699
*
6DZP|1|A|U|1735
6DZP|1|A|G|1736
6DZP|1|A|A|1737
6DZP|1|A|G|1738
6DZP|1|A|A|1739
6DZP|1|A|G|1740

Current chains

Chain A

23S rRNA

Nearby chains