IL_6DZP_071

3D structure

PDB id

6DZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

6DZP|1|A|G|1917

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZP_071 not in the Motif Atlas

Homologous match to IL_7RQB_068

Geometric discrepancy: 0.1077

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6DZP|1|A|C|1904
6DZP|1|A|G|1905
6DZP|1|A|U|1906
6DZP|1|A|A|1907
6DZP|1|A|A|1908
6DZP|1|A|C|1909
*
6DZP|1|A|G|1914
6DZP|1|A|G|1915
6DZP|1|A|A|1916
6DZP|1|A|G|1917
6DZP|1|A|A|1918
6DZP|1|A|A|1919
6DZP|1|A|G|1920

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2