IL_6DZP_088
3D structure
- PDB id
- 6DZP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.42 Å
Loop
- Sequence
- CAAC*GUGGG
- Length
- 9 nucleotides
- Bulged bases
- 6DZP|1|A|G|2462
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6DZP_088 not in the Motif Atlas
- Geometric match to IL_3NPQ_006
- Geometric discrepancy: 0.3496
- The information below is about IL_3NPQ_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65740.1
- Basepair signature
- cWW-L-R-L-R-cWW
- Number of instances in this motif group
- 6
Unit IDs
6DZP|1|A|C|2304
6DZP|1|A|A|2305
6DZP|1|A|A|2306
6DZP|1|A|C|2307
*
6DZP|1|A|G|2459
6DZP|1|A|U|2460
6DZP|1|A|G|2461
6DZP|1|A|G|2462
6DZP|1|A|G|2463
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
- Chain y
- 50S ribosomal protein L28
Coloring options: