IL_6DZP_119
3D structure
- PDB id
- 6DZP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.42 Å
Loop
- Sequence
- GGAAACG*CUAAGC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6DZP_119 not in the Motif Atlas
- Geometric match to IL_9E6Q_106
- Geometric discrepancy: 0.2565
- The information below is about IL_9E6Q_106
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_41504.1
- Basepair signature
- cWW-tSH-L-R-L-tHH-cWW
- Number of instances in this motif group
- 5
Unit IDs
6DZP|1|B|G|24
6DZP|1|B|G|25
6DZP|1|B|A|26
6DZP|1|B|A|27
6DZP|1|B|A|28
6DZP|1|B|C|29
6DZP|1|B|G|30
*
6DZP|1|B|C|56
6DZP|1|B|U|57
6DZP|1|B|A|58
6DZP|1|B|A|59
6DZP|1|B|G|60
6DZP|1|B|C|61
Current chains
- Chain B
- 5S rRNA
Nearby chains
- Chain F
- 50S ribosomal protein L5
- Chain P
- 50S ribosomal protein L18
Coloring options: