IL_6DZP_128

3D structure

PDB id

6DZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

GGG*UUAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZP_128 not in the Motif Atlas

Geometric match to IL_5E81_401

Geometric discrepancy: 0.374

The information below is about IL_5E81_401

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

6DZP|1|A|G|996
6DZP|1|A|G|997
6DZP|1|A|G|998
*
6DZP|1|A|U|1009
6DZP|1|A|U|1010
6DZP|1|A|A|1011
6DZP|1|A|C|1012

Current chains

Chain A

23S rRNA

Nearby chains

Chain W

50S ribosomal protein L25