IL_6DZP_138

3D structure

PDB id

6DZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

UUAAG*UUAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZP_138 not in the Motif Atlas

Homologous match to IL_4WF9_073

Geometric discrepancy: 0.2061

The information below is about IL_4WF9_073

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_89021.3

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6DZP|1|A|U|2068
6DZP|1|A|U|2069
6DZP|1|A|A|2070
6DZP|1|A|A|2071
6DZP|1|A|G|2072
*
6DZP|1|A|U|2111
6DZP|1|A|U|2112
6DZP|1|A|A|2113
6DZP|1|A|A|2114
6DZP|1|A|G|2115

Current chains

Chain A

23S rRNA

Nearby chains