IL_6EM1_008

3D structure

PDB id

6EM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGG*CUUUGUA

Length

10 nucleotides

Bulged bases

6EM1|1|1|U|252

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6EM1|1|1|U|169
6EM1|1|1|G|170
6EM1|1|1|G|171
*
6EM1|1|1|C|247
6EM1|1|1|U|248
6EM1|1|1|U|249
6EM1|1|1|U|250
6EM1|1|1|G|251
6EM1|1|1|U|252
6EM1|1|1|A|253

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain G

60S ribosomal protein L8-A

Chain L

60S ribosomal protein L13-A

Chain h

60S ribosomal protein L35-A

Chain m

Ribosome biogenesis protein ERB1

Chain v

Nucleolar protein 16