IL_6EM1_011
3D structure
- PDB id
- 6EM1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GAC*GU
- Length
- 5 nucleotides
- Bulged bases
- 6EM1|1|1|A|338
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6EM1_011 not in the Motif Atlas
- Homologous match to IL_5TBW_013
- Geometric discrepancy: 0.1083
- The information below is about IL_5TBW_013
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 127
Unit IDs
6EM1|1|1|G|337
6EM1|1|1|A|338
6EM1|1|1|C|339
*
6EM1|1|2|G|25
6EM1|1|2|U|26
Current chains
- Chain 1
- 25S ribosomal RNA
- Chain 2
- 5.8S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain Y
- 60S ribosomal protein L26-A
- Chain v
- Nucleolar protein 16
Coloring options: