IL_6EM1_016

3D structure

PDB id

6EM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCC*GAAUCUC

Length

10 nucleotides

Bulged bases

6EM1|1|1|C|453, 6EM1|1|1|A|478, 6EM1|1|1|U|479

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6EM1|1|1|G|452
6EM1|1|1|C|453
6EM1|1|1|C|454
*
6EM1|1|1|G|476
6EM1|1|1|A|477
6EM1|1|1|A|478
6EM1|1|1|U|479
6EM1|1|1|C|480
6EM1|1|1|U|481
6EM1|1|1|C|482

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 3

Protein MAK16

Chain 5

Ribosome biogenesis protein NSA1

Chain E

60S ribosomal protein L6-A